EUROBIS EUROBIS data served via ERDDAP
Easier access to scientific data

Brought to you by VLIZ Eurobis

ERDDAP > tabledap > Data Access Form ?

Dataset Title:  Koster historical biodiversity assessment Subscribe RSS
Institution:  TMBL   (Dataset ID: koster_historical_assessment)
Information:  Summary ? | License ? | FGDC | ISO 19115 | Metadata | Background (external link) | Subset | Files | Make a graph
 
Variable ?   Optional
Constraint #1 ?
Optional
Constraint #2 ?
   Minimum ?
   or a List of Values ?
   Maximum ?
 
 ScientificName (Not applicable) ?      
   - +  ?
 BasisOfRecord (None) ?      
   - +  ?
 InstitutionCode (None) ?          "GU"    "GU"
 YearCollected (None) ?      
   - +  ?
 MonthCollected (None) ?      
   - +  ?
 DayCollected (None) ?      
   - +  ?
 time (UTC) ?              
 ObservedIndividualCount (http://rs.tdwg.org/dwc/terms/individualCount) ?          0.0    83.0
 longitude (degrees_east) ?          11.1    11.1
  < slider >
 latitude (degrees_north) ?          58.9    58.9
  < slider >
 aphia_id (Not applicable) ?      
   - +  ?
 
Server-side Functions ?
 distinct() ?
? ("Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.")

File type: (more information)

(Documentation / Bypass this form ? )
 
(Please be patient. It may take a while to get the data.)


 

The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  ScientificName {
    String long_name "ScientificName";
    String sdn_P02_name "SeaDataNet biological format biotic parameters";
    String sdn_P02_uri "https://vocab.nerc.ac.uk/collection/P02/current/BPRP/";
    String sdn_P02_urn "SDN:P02::BPRP";
    String sdn_parameter_name "Taxon of biological entity specified elsewhere";
    String sdn_parameter_uri "https://vocab.nerc.ac.uk/collection/P01/current/SCNAME01/";
    String sdn_parameter_urn "SDN:P01::SCNAME01";
    String sdn_uom_name "Not applicable";
    String sdn_uom_uri "https://vocab.nerc.ac.uk/collection/P06/current/XXXX/";
    String sdn_uom_urn "SDN:P06::XXXX";
    String standard_name "scientificname";
    String units "Not applicable";
    String units_uri "https://vocab.nerc.ac.uk/collection/P01/current/SCNAME01/";
  }
  BasisOfRecord {
    String long_name "BasisOfRecord";
    String units "None";
    String units_uri "None";
  }
  InstitutionCode {
    String long_name "InstitutionCode";
    String units "None";
    String units_uri "None";
  }
  YearCollected {
    Float32 actual_range 1997.0, 2023.0;
    String long_name "YearCollected";
    String units "None";
    String units_uri "None";
  }
  MonthCollected {
    Float32 actual_range 2.0, 11.0;
    String long_name "MonthCollected";
    String units "None";
    String units_uri "None";
  }
  DayCollected {
    Float32 actual_range 2.0, 31.0;
    String long_name "DayCollected";
    String units "None";
    String units_uri "None";
  }
  time {
    String _CoordinateAxisType "Time";
    String axis "T";
    String ioos_category "Time";
    String long_name "Time";
    String standard_name "time";
    String time_origin "01-JAN-1970 00:00:00";
    String time_precision "1970-01-01T00:00:00Z";
    String units "seconds since 1970-01-01T00:00:00Z";
    String units_uri "https://vocab.nerc.ac.uk/collection/P01/current/CJDY1101";
  }
  ObservedIndividualCount {
    Float32 actual_range 0.0, 83.0;
    String long_name "ObservedIndividualCount";
    String units "http://rs.tdwg.org/dwc/terms/individualCount";
    String units_uri "http://rs.tdwg.org/dwc/terms/individualCount";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range 11.1, 11.1;
    String axis "X";
    String ioos_category "Location";
    String long_name "Longitude";
    String standard_name "longitude";
    String units "degrees_east";
    String units_uri "https://vocab.nerc.ac.uk/collection/P01/current/ALONZZ01";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float32 actual_range 58.9, 58.9;
    String axis "Y";
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
    String units_uri "https://vocab.nerc.ac.uk/collection/P01/current/ALATZZ01";
  }
  aphia_id {
    String long_name "aphia_id";
    String sdn_P02_name "SeaDataNet biological format biotic parameters";
    String sdn_P02_uri "https://vocab.nerc.ac.uk/collection/P02/current/BPRP/";
    String sdn_P02_urn "SDN:P02::BPRP";
    String sdn_parameter_name "Identifier (LSID) of biological entity specified elsewhere";
    String sdn_parameter_uri "https://vocab.nerc.ac.uk/collection/P01/current/SNANID01/";
    String sdn_parameter_urn "SDN:P01::SNANID01";
    String sdn_uom_name "Not applicable";
    String sdn_uom_uri "https://vocab.nerc.ac.uk/collection/P06/current/XXXX/";
    String sdn_uom_urn "SDN:P06::XXXX";
    String standard_name "aphia_id";
    String units "Not applicable";
    String units_uri "https://vocab.nerc.ac.uk/collection/P01/current/SNANID01/";
  }
 }
  NC_GLOBAL {
    String AccConID "21";
    String AccConstrDescription "This license lets others distribute, remix, tweak, and build upon your work, even commercially, as long as they credit you for the original creation. This is the most accommodating of licenses offered. Recommended for maximum dissemination and use of licensed materials.";
    String AccConstrDisplay "This dataset is licensed under a Creative Commons Attribution 4.0 International License.";
    String AccConstrEN "Attribution (CC BY)";
    String AccessConstraint "Attribution (CC BY)";
    String AccessConstraints "None";
    String Acronym "None";
    String added_date "2025-02-20 13:51:26.627000";
    String BrackishFlag "None";
    String CDate "2025-02-12";
    String cdm_data_type "Other";
    String CheckedFlag "1";
    String Citation "Nilsson C (2025). Koster historical biodiversity assessment. Version 1.5. Wildlife.ai. Occurrence dataset. https://ipt.gbif.org.nz/resource?r=koster_historical_assessment&amp;v=1.5";
    String Comments "None";
    String ContactEmail "None";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_name "Burman, Anton, Germishuys, White, Nilsson, Obst";
    String CurrencyDate "None";
    String DasID "8744";
    String DasOrigin "None";
    String DasType "None";
    String DasTypeID "None";
    String DateLastModified "{'date': '2025-03-13 13:40:14.915017', 'timezone_type': 1, 'timezone': '+01:00'}";
    String DescrCompFlag "None";
    String DescrTransFlag "None";
    String DOI "10.5281/zenodo.13589902";
    Float64 Easternmost_Easting 11.1;
    String EmbargoDate "None";
    String EngAbstract 
"Dataset of species records extracted from video footage recorded by remotely operated vehicles (ROVs) in the marine protected area Kosterhavets nationalpark on the Swedish west-coast. The original movies were collected during 1997-2023. This data set is based on videos of 70 transects across slopes and rock walls in the National Park at depths between 7-105 m. Species records were extracted from the movies using Yolov8 model, while depth information was extracted with the easyOCR python package from the ROV video overlays.

 

Original videos are archived and accessible at Tjärnö Marine Laboratory’s (Univerisity of Gothenburg). The analysis was performed using the Swedish platform for subsea image analysis (www.subsim.se). We acknowledge the support of the technical officers and ROV pilots at Tjärnö Marine Laboratory, in particular Tomas Lundälv, Roger Johannesson, and Joel White.";
    String EngDescr "None";
    String FreshFlag "None";
    Float64 geospatial_lat_max 58.9;
    Float64 geospatial_lat_min 58.9;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max 11.1;
    Float64 geospatial_lon_min 11.1;
    String geospatial_lon_units "degrees_east";
    String history 
"2025-04-24T12:29:35Z (local files)
2025-04-24T12:29:35Z http://erddap.eurobis.org/erddap/tabledap/koster_historical_assessment.html";
    String infoUrl "None";
    String InputNotes "None";
    String institution "TMBL";
    String keywords "aphia_id, BasisOfRecord, DayCollected, InstitutionCode, latitude, longitude, MonthCollected, ObservedIndividualCount, ScientificName, time, YearCollected";
    String License "https://creativecommons.org/licenses/by/4.0/";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    String Lineage "None";
    String MarineFlag "1";
    String modified_sync "2025-03-04 00:00:00";
    Float64 Northernmost_Northing 58.9;
    String OrigAbstract "None";
    String OrigDescr "None";
    String OrigDescrLang "None";
    String OrigDescrLangNL "None";
    String OrigLangCode "None";
    String OrigLangCodeExtended "None";
    String OrigLangID "None";
    String OrigTitle "None";
    String OrigTitleLang "None";
    String OrigTitleLangCode "None";
    String OrigTitleLangID "None";
    String OrigTitleLangNL "None";
    String Progress "None";
    String PublicFlag "1";
    String ReleaseDate "Feb 12 2025 12:00AM";
    String ReleaseDate0 "2025-02-12";
    String RevisionDate "None";
    String SizeReference "None";
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing 58.9;
    String standard_name_vocabulary "CF Standard Name Table v70";
    String StandardTitle "Koster historical biodiversity assessment";
    String StatusID "1";
    String subsetVariables "ScientificName,BasisOfRecord,YearCollected,MonthCollected,DayCollected,aphia_id";
    String summary 
"Dataset of species records extracted from video footage recorded by remotely operated vehicles (ROVs) in the marine protected area Kosterhavets nationalpark on the Swedish west-coast. The original movies were collected during 1997-2023. This data set is based on videos of 70 transects across slopes and rock walls in the National Park at depths between 7-105 m. Species records were extracted from the movies using Yolov8 model, while depth information was extracted with the easyOCR python package from the ROV video overlays.

 

Original videos are archived and accessible at Tjärnö Marine Laboratory’s (Univerisity of Gothenburg). The analysis was performed using the Swedish platform for subsea image analysis (www.subsim.se). We acknowledge the support of the technical officers and ROV pilots at Tjärnö Marine Laboratory, in particular Tomas Lundälv, Roger Johannesson, and Joel White.";
    String TerrestrialFlag "None";
    String title "Koster historical biodiversity assessment";
    String UDate "2025-02-27";
    String VersionDate "Feb 12 2025 12:00AM";
    String VersionDay "None";
    String VersionMonth "None";
    String VersionName "None";
    String VersionYear "None";
    String VlizCoreFlag "1";
    Float64 Westernmost_Easting 11.1;
  }
}

 

Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP (external link) Data Access Protocol (DAP) (external link) and its selection constraints (external link).

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.


 
ERDDAP, Version 2.23
Disclaimers | Privacy Policy | Contact